PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G20930.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 582aa    MW: 65934.9 Da    PI: 5.8818
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G20930.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06517543127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+ C+++ rtG+C+ Gd C +aH++
  ONIVA08G20930.2 517 PKTVMCPDWCRTGHCSSGDGCEYAHSQ 543
                      79***********************97 PP

2zf-CCCH32.31.6e-10555580126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y+te+Cr+++++  C+yGd+C++ H+
  ONIVA08G20930.2 555 YRTEPCRYWLAGKGCWYGDKCRYKHS 580
                      89*********99************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.873516544IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.94E-8516548IPR000571Zinc finger, CCCH-type
SMARTSM003560.011516543IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-11518547IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-9552581IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7553581IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868554582IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7554581IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-8555580IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MKQEEDELAV DPGVGAVCDP VTKLRFEAIV CLLDRIPITL QQIDMFGQDV AFRTKRIGNI  60
EALLDFLKGS AAATWGARAG AGEPIDASSP ELHRLVEDAE TAYRDVRGLQ PRMVVQMPRV  120
FHKVCLPKLH QLLVIARRLL AQNVALRRLL LQPVGCDVSP MALAEAAVSS DDFERHGRNK  180
VVIDEFGYED LLRRRHTGHE SQNDADDAEQ HGREVREGEY EDLILMRHRD TSHELLQDDA  240
RRRRADAEAE QQGGDGEVRD EYEDYLCRQL GAVYSGPDQI YEHDMRGPEP AHSPNTPDQI  300
YVPCERMLPY PSNCDNAEDR IHMACLALKN LVKDMEGIYS PRGTLWQYLE DVISLAHALF  360
LENTKLHRFT DQASHQDLPL QPPQGFPFQQ QPQHDGYQQP GVPFQQPQQG GYYGHGQGIM  420
FQRGGYLQDV PFQHWQWQQG GYGQGFMFPQ AQHQGGYGQG FLSEQPLPGD PSFMNMQAPY  480
YGDGGVLFQK PQHYHHGHVP SEKGAIQAKG KQKMREPKTV MCPDWCRTGH CSSGDGCEYA  540
HSQDELRVID AGPKYRTEPC RYWLAGKGCW YGDKCRYKHS TD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046200.0AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
GenBankAP0047620.0AP004762.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686H11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649324.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 57
SwissprotA3BUD20.0C3H57_ORYSJ; Putative zinc finger CCCH domain-containing protein 57
TrEMBLA0A0E0IDN80.0A0A0E0IDN8_ORYNI; Uncharacterized protein
STRINGORGLA08G0165700.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-15C3H family protein